JOURNAL PUBLICATIONS | PUBMED | ResearchGate
Mazeika, V., Mirsanaye, K., Castaño, L. U., Krouglov, S., Alizadeh, M., Maciulis, M., Kontenis, L., Karabanovas, V., & Barzda, V. (2025). Double Stokes polarimetric microscopy for chiral fibrillar aggregates. Scientific Reports, 15(1), 4464–14. https://doi.org/10.1038/s41598-025-86893-0
Alizadeh, M., Habach, F., Maciulis, M., Kontenis, L., Bagdonas, S., Krouglov, S., Baranauskas, V., Bulotiene, D., Karabanovas, V., Rotomskis, R., Akens, M. K., & Barzda, V. (2023). Polarimetric second harmonic generation microscopy of partially oriented fibers II: Imaging study. Biophysical Journal, 122(19), 3937–3949. https://doi.org/10.1016/j.bpj.2023.08.015
Alizadeh, M., Krouglov, S., & Barzda, V. (2023). Polarimetric second-harmonic generation microscopy of partially oriented fibers I: Digital modeling. Biophysical Journal, 122(19), 3924–3936. https://doi.org/10.1016/j.bpj.2023.08.016
Uribe Castaño, L., Mirsanaye, K., Kontenis, L., Krouglov, S., Žurauskas, E., Navab, R., Yasufuku, K., Tsao, M., Akens, M. K., Wilson, B. C., & Barzda, V. (2023). Wide‐field Stokes polarimetric microscopy for second harmonic generation imaging. Journal of Biophotonics, 16(5), e202200284-n/a. https://doi.org/10.1002/jbio.202200284
Mirsanaye, K., Uribe Castaño, L., Kamaliddin, Y., Golaraei, A., Kontenis, L., Ẑurauskas, E., Navab, R., Yasufuku, K., Tsao, M.-S., Wilson, B. C., & Barzda, V. (2022). Unsupervised determination of lung tumor margin with widefield polarimetric second-harmonic generation microscopy. Scientific Reports, 12(1), 20713–13. https://doi.org/10.1038/s41598-022-24973-1
Mirsanaye, K., Uribe Castaño, L., Kamaliddin, Y., Golaraei, A., Augulis, R., Kontenis, L., Done, S. J., Žurauskas, E., Stambolic, V., Wilson, B. C., & Barzda, V. (2022). Machine learning-enabled cancer diagnostics with widefield polarimetric second-harmonic generation microscopy. Scientific Reports, 12(1), 10290–10290. https://doi.org/10.1038/s41598-022-13623-1
Karunendiran, A., Mirsanaye, K., Stewart, B. A., & Barzda, V. (2022). Second Harmonic Generation Properties in Chiral Sarcomeres of Drosophila Larval Muscles. Frontiers in Physics, 10. https://doi.org/10.3389/fphy.2022.758709
Karunendiran, A., Nguyen, C. T., Barzda, V., & Stewart, B. A. (2021). Disruption of Drosophila larval muscle structure and function by UNC45 knockdown. BMC Cell Biology, 22(1), 38–38. https://doi.org/10.1186/s12860-021-00373-7
Tokarz, D., Cisek, R., Joseph, A., Asa, S. L., Wilson, B. C., & Barzda, V. (2020). Characterization of pathological thyroid tissue using polarization-sensitive second harmonic generation microscopy. Laboratory Investigation, 100(10), 1280–1287. https://doi.org/10.1038/s41374-020-0475-7
Golaraei, A., Mostaço-Guidolin, L. B., Raja, V., Navab, R., Wang, T., Sakashita, S., Yasufuku, K., Tsao, M.-S., Wilson, B. C., & Barzda, V. (2020). Polarimetric second-harmonic generation microscopy of the hierarchical structure of collagen in stage I-III non-small cell lung carcinoma. Biomedical Optics Express, 11(4), 1851–1863. https://doi.org/10.1364/BOE.387744
Golaraei, A., Kontenis, L., Karunendiran, A., Stewart, B. A., & Barzda, V. (2020). Dual‐ and single‐shot susceptibility ratio measurements with circular polarizations in second‐harmonic generation microscopy. Journal of Biophotonics, 13(4), e201960167-n/a. https://doi.org/10.1002/jbio.201960167
Mirsanaye, K., Golaraei, A., Habach, F., Žurauskas, E., Venius, J., Rotomskis, R., & Barzda, V. (2019). Polar organization of collagen in human cardiac tissue revealed with polarimetric second-harmonic generation microscopy. Biomedical Optics Express, 10(10), 5025–5030. https://doi.org/10.1364/BOE.10.005025
Zhao, H., Cisek, R., Karunendiran, A., Tokarz, D., Stewart, B. A., & Barzda, V. (2019). Live imaging of contracting muscles with wide-field second harmonic generation microscopy using a high power laser. Biomedical Optics Express, 10(10), 5130–5135. https://doi.org/10.1364/BOE.10.005130
Golaraei, A., Kontenis, L., Mirsanaye, K., Krouglov, S., Akens, M. K., Wilson, B. C., & Barzda, V. (2019). Complex Susceptibilities and Chiroptical Effects of Collagen Measured with Polarimetric Second-Harmonic Generation Microscopy. Scientific Reports, 9(1), 12488–12. https://doi.org/10.1038/s41598-019-48636-w
Tokarz, D., Cisek, R., Joseph, A., Golaraei, A., Mirsanaye, K., Krouglov, S., Asa, S. L., Wilson, B. C., & Barzda, V. (2019). Characterization of Pancreatic Cancer Tissue Using Multiphoton Excitation Fluorescence and Polarization-Sensitive Harmonic Generation Microscopy. Frontiers in Oncology, 9, 272–272. https://doi.org/10.3389/fonc.2019.00272
Krouglov, S., & Barzda, V. (2019). Three-dimensional nonlinear Stokes–Mueller polarimetry. Journal of the Optical Society of America. B, Optical Physics, 36(2), 541–550. https://doi.org/10.1364/JOSAB.36.000541
Golaraei, A., Mirsanaye, K., Ro, Y., Krouglov, S., Akens, M. K., Wilson, B. C., & Barzda, V. (2019). Collagen chirality and three‐dimensional orientation studied with polarimetric second‐harmonic generation microscopy. Journal of Biophotonics, 12(1), e201800241-n/a. https://doi.org/10.1002/jbio.201800241
Fung, K. L. B., Samim, M., Gribble, A., Barzda, V., & Vitkin, I. A. (2018). Monte Carlo simulation of polarization‐sensitive second‐harmonic generation and propagation in biological tissue. Journal of Biophotonics, 11(12), e201800036-n/a. https://doi.org/10.1002/jbio.201800036
Cisek, R., Tokarz, D., Kontenis, L., Barzda, V., & Steup, M. (2018). Polarimetric second harmonic generation microscopy: An analytical tool for starch bioengineering. Starch - Stärke, 70(1–2). https://doi.org/10.1002/star.201700031
Karunendiran, A., Cisek, R., Tokarz, D., Barzda, V., & Stewart, B. A. (2017). Examination of Drosophila eye development with third harmonic generation microscopy. Biomedical Optics Express, 8(10), 4504–4513. https://doi.org/10.1364/BOE.8.004504
Burke, M., Golaraei, A., Atkins, A., Akens, M., Barzda, V., & Whyne, C. (2017). Collagen fibril organization within rat vertebral bone modified with metastatic involvement. Journal of Structural Biology, 199(2), 153–164. https://doi.org/10.1016/j.jsb.2017.06.008
Kruglov, S. I., & Barzda, V. (2017). Modified Gibbs’s representation of rotation matrix. https://doi.org/10.48550/arxiv.1703.00300
Kontenis, L., Samim, M., Krouglov, S., & Barzda, V. (2017). Third-harmonic generation Stokes-Mueller polarimetric microscopy. Optics Express, 25(12), 13174–13188. https://doi.org/10.1364/OE.25.013174
Samim, M., Krouglov, S., James, D. F., & Barzda, V. (2016). Characterization of heterogeneous media using nonlinear Stokes–Mueller polarimetry. Journal of the Optical Society of America. B, Optical Physics, 33(12), 2617–2625. https://doi.org/10.1364/JOSAB.33.002617
Golaraei, A., Kontenis, L., Cisek, R., Tokarz, D., Done, S. J., Wilson, B. C., & Barzda, V. (2016). Changes of collagen ultrastructure in breast cancer tissue determined by second-harmonic generation double Stokes-Mueller polarimetric microscopy. Biomedical Optics Express, 7(10), 4054–4068. https://doi.org/10.1364/BOE.7.004054
Samim, M., Krouglov, S., & Barzda, V. (2016). Three-photon Stokes-Mueller polarimetry. Physical Review. A, 93(3). https://doi.org/10.1103/PhysRevA.93.033839
Kontenis, L., Samim, M., Karunendiran, A., Krouglov, S., Stewart, B., & Barzda, V. (2016). Second harmonic generation double stokes Mueller polarimetric microscopy of myofilaments. Biomedical Optics Express, 7(2), 559–569. https://doi.org/10.1364/BOE.7.000559
Samim, M., Krouglov, S., & Barzda, V. (2016). Nonlinear Stokes-Mueller polarimetry. Physical Review. A, 93(1). https://doi.org/10.1103/PhysRevA.93.013847
All Publications (2025-1994) >>
BOOKS AND/OR CHAPTERS
Alizadeh, M., Barzda, V., Borisova, E., Prasada K., S., Kistenev, Y. V., & Mazumder, N. (2023). Polarization-Resolved Nonlinear Optical Microscopy. In Optical Polarimetric Modalities for Biomedical Research (pp. 179–214). Springer International Publishing. https://doi.org/10.1007/978-3-031-31852-8_8
Tokarz, D., Cisek, R., Barzda, V., & Nitschke, F. (2021). Polarimetric Nonlinear Microscopy of Starch Granules: Visualization of the Structural Order of α-Glucan Chains within a Native Starch Particle. In Enzymology of Complex Alpha-Glucans (1st ed., pp. 18–33). Routledge. https://doi.org/10.1201/b22412-2
Cisek, R., Prent, N., Greenhalgh, C., Sandkuijl, D., Tuer, A., Major, A. and Barzda, V., & Yakovlev, V. (2009). Multicontrast Nonlinear Imaging Microscopy. In Biochemical Applications of Nonlinear Optical Spectroscopy. Taylor & Francis Group.
Barzda, V., Matysik, J., & Aartsma, T. (2008). Non-Linear Contrast Mechanisms for Optical Microscopy. In Biophysical Techniques in Photosynthesis (Vol. 26, pp. 35–54). Springer Netherlands. https://doi.org/10.1007/978-1-4020-8250-4_3
Squier, J., Müller, M., and Barzda, V. (2008) Multiphoton Microscopy with Ultrafast Lasers, In Ultrafast Optics, R. Trebino and J Squier eds, Vol. 2, Ch. 22, pp.1-32, Trafford Publishing, currently published on line: www.physics.gatech.edu/gcuo/22%20Imaging%20Squier%20et%20al.pdf
Last Updated: May 1, 2025